Difference between revisions of "Ubuntu HPC Install and Configure Modules"

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(Created page with "Home > Ubuntu > HPC setup with openpbs and openmpi > Install and Configure Modules #Create directory for modules path in master node share path #:<pre> #:: mkdir -p /export/modules/ #:</pre> #Configure mpi module file in master node ##Create directory for mpi ##:<pre> ##:: mkdir -p /export/modules/mpi ##:: cd /export/modules/mpi ##:</pre> ## Create mpi-4.1.1 modu...")
 
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##:<pre>
##:<pre>
##:: mkdir -p /export/modules/mpi
##:: mkdir -p /export/modules/mpi
##:: cd /export/modules/mpi
##:</pre>
##:</pre>
## Create mpi-4.1.1 module file with: <source type="shell">
## Create '<tt>/export/modules/mpi/mpi-4.1.1</tt>' module file with: <source type="shell">
#%Module 1.0
#%Module 1.0
conflict                mpi
conflict                mpi

Latest revision as of 05:02, 27 February 2023

Home > Ubuntu > HPC setup with openpbs and openmpi > Install and Configure Modules

  1. Create directory for modules path in master node share path 
    mkdir -p /export/modules/
  2. Configure mpi module file in master node
    1. Create directory for mpi 
      mkdir -p /export/modules/mpi
    2. Create '/export/modules/mpi/mpi-4.1.1' module file with: 
      #%Module 1.0
conflict                mpi
prepend-path PATH {/export/apps/mpi/openmpi-4.1.1/bin};
prepend-path LD_LIBRARY_PATH {/export/apps/mpi/openmpi-4.1.1/lib};
prepend-path MANPATH {/export/apps/mpi/openmpi-4.1.1/share/man};
prepend-path LD_RUN_PATH {/export/apps/mpi/openmpi-4.1.1/lib};
prepend-path C_INCLUDE_PATH {/export/apps/mpi/openmpi-4.1.1/include};
prepend-path CXX_INCLUDE_PATH {/export/apps/mpi/openmpi-4.1.1/include};
prepend-path CPP_INCLUDE_PATH {/export/apps/mpi/openmpi-4.1.1/include};
prepend-path CPLUS_INCLUDE_PATH {/export/apps/mpi/openmpi-4.1.1/include};
    3. For new module path to work, Logout and login back from all nodes
    4. Check the available modules in all nodes 
      module avail
  3. As a HPC user load mpi module and try to run stress job again: 
    module load mpi/mpi-4.1.1
    

    mpirun -host master,<node-1>,<node-2> -n 3 /usr/bin/stress --cpu 4 --vm 2 --vm-bytes 300M --timeout 60s


Home > Ubuntu > HPC setup with openpbs and openmpi > Install and Configure Modules

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